bionetgen
Software for rule-based modeling of biochemical systems
BioNetGen is software for the specification and simulation of rule-based models of biochemical systems, including signal transduction, metabolic, and genetic regulatory networks. The BioNetGen language has recently been extended to include explicit representation of compartments. A review of methods for rule-based modeling is available in Science Signaling (Sci. STKE, 18 July 2006, Issue 344, p. re6). BioNetGen is presently a mixture of Perl and C++. Network generation is currently implemented in Perl, the network simulator is C++, and a new language parser is being developed with ANTLR.
Releases Overview
| Release | Stable | Testing |
|---|---|---|
| Fedora Rawhide | 2.7.0-1.fc36 | - |
| Fedora 35 | 2.6.0-3.fc35 | - |
| Fedora 34 | 2.5.2-2.fc34 | - |
| EPEL 7 | 2.5.0-5.el7 | - |
- Upstream: https://github.com/RuleWorld/bionetgen
- License(s): GPLv3
- Maintainers: sagitter, zbyszek
Related Packages
You can contact the maintainers of this package via email at
bionetgen dash maintainers at fedoraproject dot org.
Sources on Pagure