R-SummarizedExperiment-1.22.0-2.fc35

Date	Author	Change
2021-07-21	Fedora Release Engineering <releng at fedoraproject dot org> - 1.22.0-2	- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
2021-06-16	Tom Callaway <spot at fedoraproject dot org> - 1.22.0-1	- update to 1.22.0 - Rebuilt for R 4.1.0
2021-02-04	Tom Callaway <spot at fedoraproject dot org> - 1.20.0-1	- update to 1.20.0
2021-01-25	Fedora Release Engineering <releng at fedoraproject dot org> - 1.18.1-3	- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
2020-07-27	Fedora Release Engineering <releng at fedoraproject dot org> - 1.18.1-2	- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
2020-06-08	Tom Callaway <spot at fedoraproject dot org> - 1.18.1-1	- update to 1.18.1 - rebuild for R 4
2020-01-28	Fedora Release Engineering <releng at fedoraproject dot org> - 1.16.0-3	- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
2019-11-21	Elliott Sales de Andrade <quantum dot analyst at gmail dot com> - 1.16.0-2	- Exclude Suggests for unavailable packages
2019-11-06	Tom Callaway <spot at fedoraproject dot org> - 1.16.0-1	- update to 1.16.0
2019-08-12	Elliott Sales de Andrade <quantum dot analyst at gmail dot com> - 1.10.1-5	- Remove explicit dependencies provided by automatic dependency generator

usr/
- share/
  - R/
    - library/
      - SummarizedExperiment/
        
        DESCRIPTION
        
        INDEX
        
        Meta/
        
        Rd.rds
        
        features.rds
        
        hsearch.rds
        
        links.rds
        
        nsInfo.rds
        
        package.rds
        
        vignette.rds
        
        NAMESPACE
        
        NEWS
        
        R/
        
        SummarizedExperiment
        
        SummarizedExperiment.rdb
        
        SummarizedExperiment.rdx
        
        doc/
        
        Extensions.R
        
        Extensions.Rmd
        
        Extensions.html
        
        SE.svg
        
        SummarizedExperiment.R
        
        SummarizedExperiment.Rmd
        
        SummarizedExperiment.html
        
        index.html
        
        extdata/
        
        example.loom
        
        kallisto/
        
        abundance.h5
        
        abundance.tsv
        
        abundance.txt
        
        run_info.json
        
        help/
        
        $,SummarizedExperiment-method.html
        
        $<-,SummarizedExperiment-method.html
        
        AnIndex
        
        Assays-class.html
        
        Assays.html
        
        AssaysInEnv-class.html
        
        AssaysInEnv.html
        
        Assays_OR_NULL-class.html
        
        Assays_OR_NULL.html
        
        Compare,ANY,RangedSummarizedExperiment-method.html
        
        Compare,RangedSummarizedExperiment,ANY-method.html
        
        Compare,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        KALLISTO_ASSAYS.html
        
        RangedSummarizedExperiment-class.html
        
        RangedSummarizedExperiment.html
        
        ShallowData-class.html
        
        ShallowData.html
        
        ShallowSimpleListAssays-class.html
        
        ShallowSimpleListAssays.html
        
        SimpleAssays-class.html
        
        SimpleAssays.html
        
        SummarizedExperiment-class.html
        
        SummarizedExperiment.html
        
        SummarizedExperiment.rdb
        
        SummarizedExperiment.rdx
        
        [,Assays,ANY,ANY,ANY-method.html
        
        [,Assays,ANY-method.html
        
        [,SummarizedExperiment,ANY,ANY,ANY-method.html
        
        [,SummarizedExperiment,ANY-method.html
        
        [,SummarizedExperiment-method.html
        
        [<-,Assays,ANY,ANY,ANY-method.html
        
        [<-,SummarizedExperiment,ANY,ANY,SummarizedExperiment-method.html
        
        [[,SummarizedExperiment,ANY,missing-method.html
        
        [[<-,SummarizedExperiment,ANY,missing-method.html
        
        acbind,Matrix-method.html
        
        aliases.rds
        
        arbind,Matrix-method.html
        
        assay,SummarizedExperiment,character-method.html
        
        assay,SummarizedExperiment,missing-method.html
        
        assay,SummarizedExperiment,numeric-method.html
        
        assay.html
        
        assay<-,SummarizedExperiment,character-method.html
        
        assay<-,SummarizedExperiment,missing-method.html
        
        assay<-,SummarizedExperiment,numeric-method.html
        
        assay<-.html
        
        assayNames,SummarizedExperiment-method.html
        
        assayNames.html
        
        assayNames<-,SummarizedExperiment,character-method.html
        
        assayNames<-.html
        
        assays,SummarizedExperiment-method.html
        
        assays.html
        
        assays<-,SummarizedExperiment,SimpleList-method.html
        
        assays<-,SummarizedExperiment,list-method.html
        
        assays<-.html
        
        cbind,Assays-method.html
        
        cbind,SummarizedExperiment-method.html
        
        class:Assays.html
        
        class:AssaysInEnv.html
        
        class:Assays_OR_NULL.html
        
        class:RangedSummarizedExperiment.html
        
        class:ShallowData.html
        
        class:ShallowSimpleListAssays.html
        
        class:SimpleAssays.html
        
        class:SummarizedExperiment.html
        
        coerce,AssaysInEnv,SimpleList-method.html
        
        coerce,ExpressionSet,RangedSummarizedExperiment-method.html
        
        coerce,ExpressionSet,SummarizedExperiment-method.html
        
        coerce,RangedSummarizedExperiment,ExpressionSet-method.html
        
        coerce,RangedSummarizedExperiment,SummarizedExperiment-method.html
        
        coerce,ShallowSimpleListAssays,SimpleList-method.html
        
        coerce,SimpleAssays,SimpleList-method.html
        
        coerce,SimpleList,AssaysInEnv-method.html
        
        coerce,SimpleList,ShallowSimpleListAssays-method.html
        
        coerce,SimpleList,SimpleAssays-method.html
        
        coerce,SummarizedExperiment,ExpressionSet-method.html
        
        coerce,SummarizedExperiment,RangedSummarizedExperiment-method.html
        
        colData,SummarizedExperiment-method.html
        
        colData.html
        
        colData<-,SummarizedExperiment,DataFrame-method.html
        
        colData<-,SummarizedExperiment,NULL-method.html
        
        colData<-.html
        
        combineCols,SummarizedExperiment-method.html
        
        combineCols.html
        
        combineRows,SummarizedExperiment-method.html
        
        combineRows.html
        
        coverage,RangedSummarizedExperiment-method.html
        
        coverage-methods.html
        
        coverage.html
        
        dim,Assays-method.html
        
        dim,SummarizedExperiment-method.html
        
        dimnames,RangedSummarizedExperiment-method.html
        
        dimnames,SummarizedExperiment-method.html
        
        dimnames<-,RangedSummarizedExperiment,list-method.html
        
        dimnames<-,SummarizedExperiment,NULL-method.html
        
        dimnames<-,SummarizedExperiment,list-method.html
        
        disjointBins,RangedSummarizedExperiment-method.html
        
        disjointBins.html
        
        distance,ANY,RangedSummarizedExperiment-method.html
        
        distance,RangedSummarizedExperiment,ANY-method.html
        
        distance,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        distance.html
        
        distanceToNearest,ANY,RangedSummarizedExperiment-method.html
        
        distanceToNearest,RangedSummarizedExperiment,ANY-method.html
        
        distanceToNearest,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        distanceToNearest.html
        
        duplicated,RangedSummarizedExperiment-method.html
        
        elementMetadata,RangedSummarizedExperiment-method.html
        
        elementMetadata<-,RangedSummarizedExperiment-method.html
        
        end,RangedSummarizedExperiment-method.html
        
        end<-,RangedSummarizedExperiment-method.html
        
        findOverlaps,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        findOverlaps,RangedSummarizedExperiment,Vector-method.html
        
        findOverlaps,Vector,RangedSummarizedExperiment-method.html
        
        findOverlaps-methods.html
        
        findOverlaps.html
        
        flank,RangedSummarizedExperiment-method.html
        
        flank.html
        
        follow,ANY,RangedSummarizedExperiment-method.html
        
        follow,RangedSummarizedExperiment,ANY-method.html
        
        follow,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        follow.html
        
        geneRangeMapper.html
        
        getListElement,Assays-method.html
        
        getListElement,AssaysInEnv-method.html
        
        granges,RangedSummarizedExperiment-method.html
        
        horizontal_slot_names,SummarizedExperiment-method.html
        
        inter-range-methods.html
        
        intra-range-methods.html
        
        is.unsorted,RangedSummarizedExperiment-method.html
        
        isDisjoint,RangedSummarizedExperiment-method.html
        
        isDisjoint.html
        
        length,Assays-method.html
        
        length,AssaysInEnv-method.html
        
        length,SummarizedExperiment-method.html
        
        makeSummarizedExperimentFromDataFrame.html
        
        makeSummarizedExperimentFromExpressionSet.html
        
        makeSummarizedExperimentFromLoom.html
        
        mcols,RangedSummarizedExperiment-method.html
        
        mcols<-,RangedSummarizedExperiment-method.html
        
        naiveRangeMapper.html
        
        names,Assays-method.html
        
        names,AssaysInEnv-method.html
        
        names,RangedSummarizedExperiment-method.html
        
        names,SummarizedExperiment-method.html
        
        names<-,Assays-method.html
        
        names<-,AssaysInEnv-method.html
        
        names<-,RangedSummarizedExperiment-method.html
        
        names<-,SummarizedExperiment-method.html
        
        narrow,RangedSummarizedExperiment-method.html
        
        narrow.html
        
        nearest,ANY,RangedSummarizedExperiment-method.html
        
        nearest,RangedSummarizedExperiment,ANY-method.html
        
        nearest,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        nearest-methods.html
        
        nearest.html
        
        order,RangedSummarizedExperiment-method.html
        
        parallel_slot_names,RangedSummarizedExperiment-method.html
        
        parallel_slot_names,SummarizedExperiment-method.html
        
        paths.rds
        
        pcompare,ANY,RangedSummarizedExperiment-method.html
        
        pcompare,RangedSummarizedExperiment,ANY-method.html
        
        pcompare,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        precede,ANY,RangedSummarizedExperiment-method.html
        
        precede,RangedSummarizedExperiment,ANY-method.html
        
        precede,RangedSummarizedExperiment,RangedSummarizedExperiment-method.html
        
        precede.html
        
        probeRangeMapper.html
        
        promoters,RangedSummarizedExperiment-method.html
        
        promoters.html
        
        ranges,RangedSummarizedExperiment-method.html
        
        ranges<-,RangedSummarizedExperiment-method.html
        
        rank,RangedSummarizedExperiment-method.html
        
        rbind,Assays-method.html
        
        rbind,SummarizedExperiment-method.html
        
        readKallisto.html
        
        readKallistoBootstrap.html
        
        realize,SummarizedExperiment-method.html
        
        resize,RangedSummarizedExperiment-method.html
        
        resize.html
        
        restrict,RangedSummarizedExperiment-method.html
        
        restrict.html
        
        rowData,SummarizedExperiment-method.html
        
        rowData.html
        
        rowData<-,SummarizedExperiment-method.html
        
        rowData<-.html
        
        rowRanges,RangedSummarizedExperiment-method.html
        
        rowRanges,SummarizedExperiment-method.html
        
        rowRanges.html
        
        rowRanges<-,RangedSummarizedExperiment,NULL-method.html
        
        rowRanges<-,SummarizedExperiment,GRangesList-method.html
        
        rowRanges<-,SummarizedExperiment,GenomicRanges-method.html
        
        rowRanges<-,SummarizedExperiment,NULL-method.html
        
        rowRanges<-.html
        
        seqinfo,RangedSummarizedExperiment-method.html
        
        seqinfo<-,RangedSummarizedExperiment-method.html
        
        seqnames,RangedSummarizedExperiment-method.html
        
        setListElement,Assays-method.html
        
        setListElement,AssaysInEnv-method.html
        
        shift,RangedSummarizedExperiment-method.html
        
        shift.html
        
        show,SummarizedExperiment-method.html
        
        sort,RangedSummarizedExperiment-method.html
        
        split,RangedSummarizedExperiment,ANY-method.html
        
        split,RangedSummarizedExperiment-method.html
        
        start,RangedSummarizedExperiment-method.html
        
        start<-,RangedSummarizedExperiment-method.html
        
        strand,RangedSummarizedExperiment-method.html
        
        strand<-,RangedSummarizedExperiment,ANY-method.html
        
        subset,RangedSummarizedExperiment-method.html
        
        subset,SummarizedExperiment-method.html
        
        trim,RangedSummarizedExperiment-method.html
        
        updateObject,Assays-method.html
        
        updateObject,RangedSummarizedExperiment-method.html
        
        updateObject,SummarizedExperiment-method.html
        
        vertical_slot_names,SummarizedExperiment-method.html
        
        width,RangedSummarizedExperiment-method.html
        
        width<-,RangedSummarizedExperiment-method.html
        
        html/
        
        00Index.html
        
        Assays-class.html
        
        R.css
        
        RangedSummarizedExperiment-class.html
        
        SummarizedExperiment-class.html
        
        coverage-methods.html
        
        findOverlaps-methods.html
        
        inter-range-methods.html
        
        intra-range-methods.html
        
        makeSummarizedExperimentFromDataFrame.html
        
        makeSummarizedExperimentFromExpressionSet.html
        
        makeSummarizedExperimentFromLoom.html
        
        nearest-methods.html
        
        readKallisto.html
        
        scripts/
        
        Find_and_update_objects/
        
        README
        
        collect_rda_objects.R
        
        collect_rda_objects_to_update.R
        
        data_store_RDA_OBJECTS_TO_UPDATE
        
        pkgs_RDA_OBJECTS_TO_UPDATE
        
        update_rda_objects.R
        
        unitTests/
        
        test_Assays-class.R
        
        test_RangedSummarizedExperiment-class.R
        
        test_SummarizedExperiment-class.R
        
        test_combine-methods.R
        
        test_coverage-methods.R
        
        test_findOverlaps-methods.R
        
        test_inter-range-methods.R
        
        test_intra-range-methods.R
        
        test_makeSummarizedExperimentFromDataFrame.R
        
        test_makeSummarizedExperimentFromExpressionSet.R
        
        test_nearest-methods.R

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